euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

92 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip2018 chr1 81855784 81855784 + L1-Ta germline . no 610 .
srip3335 chr1 108417633 108417633 - L1-Ta somatic validated no 610 VAV3
srip10542 chr10 91717633 91717633 - L1-Ta germline validated no 610 .
srip13203 chr11 29463700 29463700 + L1-Ta germline . no 610 .
srip14261 chr11 41831810 41831810 - L1-Ta germline . no 610 .
srip15362 chr11 58171839 58171839 + L1-Ta germline . no 610 .
srip17487 chr11 104260553 104260553 - L1-pre-Ta germline . no 610 .
srip18050 chr11 110377885 110377885 - L1-Ta germline . no 610 .
srip18141 chr11 112084565 112084565 + L1-Ta germline . no 610 BCO2
srip19288 chr11 134305648 134305648 - L1-Ta germline validated no 610 .
srip19912 chr12 11219230 11219230 - L1-Ta germline . no 610 PRH1-PRR4
srip20876 chr12 31353756 31353756 - L1-Ta germline . no 610 OVOS2
srip21000 chr12 33325795 33325795 - L1-Ta germline . no 610 .
srip23023 chr12 63569062 63569062 + L1-Ta germline . no 610 .
srip25535 chr12 117814443 117814443 - L1-Ta germline validated no 610 .
srip26495 chr12 126803020 126803020 - L1-Ta germline . no 610 .
srip26763 chr13 22489757 22489757 + L1-Ta germline . no 610 .
srip27128 chr13 27487992 27487992 + L1-Ta germline . no 610 .
srip28182 chr13 48856543 48856543 + L1-Ta germline . no 610 .
srip28922 chr13 61462329 61462329 - L1-Ta germline . no 610 .
srip37347 chr14 59220402 59220402 + L1-Ta germline . no 610 .
srip39756 chr15 37707896 37707896 - L1-Ta germline . no 610 .
srip40120 chr15 47507326 47507326 - L1-Ta germline . no 610 SEMA6D
srip44087 chr16 17755307 17755307 - L1-Ta germline . no 610 .
srip45193 chr16 32525620 32525620 - L1-Ta germline . no 610 .
srip46351 chr16 71028058 71028058 + L1-Ta germline validated no 610 HYDIN
srip46408 chr16 76865792 76865792 - L1-Ta germline . no 610 .
srip47916 chr17 36487107 36487107 + L1-Ta somatic validated no 610 GPR179
srip48444 chr17 68357410 68357410 + L1-Ta germline . no 610 .
srip50196 chr18 50097750 50097750 - L1-Ta germline . no 610 DCC
srip50929 chr18 59466376 59466376 + L1-Ta germline . no 610 .
srip52420 chr19 45444553 45444553 + L1-Ta germline . no 610 .
srip53933 chr2 35879355 35879355 + L1-Ta germline . no 610 .
srip54939 chr2 53460057 53460057 + L1-Ta germline . no 610 .
srip56252 chr2 82098046 82098046 + L1-Ta germline . no 610 .
srip58224 chr2 141852913 141852913 - L1-Ta germline . no 610 LRP1B
srip58946 chr2 147020924 147020924 + L1-Ta germline . no 610 .
srip59765 chr2 168735519 168735519 - L1-Ta germline . no 610 .
srip62664 chr2 236674661 236674661 - L1-Ta somatic validated no 610 AGAP1
srip63114 chr20 9235821 9235821 - L1-Ta somatic validated no 610 PLCB4
srip63180 chr20 9477922 9477922 - L1-Ta germline . no 610 .
srip64547 chr20 37512976 37512976 - L1-Ta somatic validated no 610 PPP1R16B
srip64754 chr20 41952104 41952104 - L1-Ta germline . no 610 .
srip65870 chr21 19517306 19517306 - L1-Ta germline . no 610 .
srip66173 chr21 23626190 23626190 - L1-Ta germline . no 610 .
srip71429 chr3 35803162 35803162 - L1-Ta germline . no 610 ARPP21
srip72725 chr3 55788580 55788580 + L1-Ta germline validated no 610 ERC2
srip73431 chr3 59852905 59852905 + L1-Ta germline validated no 610 FHIT
srip75595 chr3 85576568 85576568 + L1-Ta germline . no 610 CADM2
srip78574 chr3 151148542 151148542 - L1-Ta germline validated no 610 MED12L
srip79330 chr3 162717309 162717309 + L1-Ta germline . no 610 .
srip80066 chr3 173917283 173917283 + L1-Ta germline . no 610 NLGN1
srip81663 chr3 187835313 187835313 - L1-Ta germline . no 610 .
srip82139 chr3 193354185 193354185 - L1-Ta germline validated no 610 OPA1
srip84724 chr4 47007790 47007790 - L1-Ta germline . no 610 .
srip84919 chr4 48228193 48228193 + L1-Ta somatic validated no 610 TEC
srip85390 chr4 57497067 57497067 - L1-Ta germline . no 610 .
srip92247 chr4 134596425 134596425 + L1-Ta germline . no 610 .
srip92637 chr4 138177325 138177325 + L1-Ta germline . no 610 .
srip93844 chr4 158907270 158907270 - L1-Ta germline . no 610 .
srip95390 chr4 190659703 190659703 + L1-Ta germline . no 610 .
srip98022 chr5 33797541 33797541 - L1-Ta germline . no 610 ADAMTS12
srip98175 chr5 39026371 39026371 + L1-Ta somatic validated no 610 RICTOR
srip100794 chr5 89450784 89450784 + L1-Ta germline validated no 610 .
srip104332 chr5 147263501 147263501 - L1-Ta germline . no 610 .
srip105585 chr5 159351203 159351203 - L1-Ta germline . no 610 ADRA1B
srip105802 chr5 164495142 164495142 - L1-Ta germline . no 610 LOC100507193
srip105901 chr5 165848913 165848913 - L1-Ta germline . no 610 .
srip109540 chr6 63368207 63368207 + L1-Ta germline . no 610 .
srip111095 chr6 77980671 77980671 - L1-Ta germline . no 610 .
srip111294 chr6 81293576 81293576 - L1-Ta germline . no 610 .
srip112786 chr6 102846084 102846084 - L1-Ta germline . no 610 .
srip115050 chr6 157968734 157968734 - L1-Ta germline . no 610 ZDHHC14
srip115675 chr6 162181262 162181262 + L1-Ta germline . no 610 PARK2
srip116374 chr7 17094715 17094715 + L1-Ta germline . no 610 .
srip119962 chr7 84901732 84901732 - L1-Ta germline . no 610 .
srip124089 chr8 4452925 4452925 - L1-Ta germline . no 610 CSMD1
srip124569 chr8 5829286 5829286 - L1-Ta germline . no 610 .
srip127210 chr8 72399219 72399219 - L1-Ta germline . no 610 .
srip128214 chr8 87315035 87315035 + L1-Ta germline . no 610 .
srip129980 chr8 131041209 131041209 + L1-Ta germline . no 610 .
srip130379 chr8 137019478 137019478 + L1-Ta germline . no 610 .
srip131531 chr9 9236598 9236598 + L1-Ta germline . no 610 PTPRD
srip132412 chr9 30674423 30674423 - L1-Ta germline . no 610 .
srip132873 chr9 32092745 32092745 - L1-Ta germline . no 610 .
srip133382 chr9 32463888 32463888 - L1-Ta germline validated no 610 DDX58
srip134152 chr9 81568409 81568409 + L1-Ta germline validated no 610 .
srip136182 chr9 139374289 139374289 + L1-Ta somatic validated no 610 SEC16A
srip136788 chrX 29269149 29269149 - L1-Ta germline . no 610 IL1RAPL1
srip140293 chrX 111229558 111229558 - L1-Ta germline . no 610 TRPC5
srip140765 chrX 119892834 119892834 - L1-Ta germline . no 610 .
srip141354 chrX 129525268 129525268 - L1-Ta germline . no 610 .